Day One
Welcome: Josh Stuart
Resources 1, Chair Obi Griffith
Obi Griffith: Development of Informatics Resources for Interpretation of Clinically Actionable Variants in Cancer
Terry Meehan: The PDX Integrator – Re-Purposing KOMP2 Informatics to Widely Disseminate Data from Patient Derived Xenografts and Electronic Access to Mouse Tumor Data
John Weinstein and Bradley Broom: Next-Generation Clustered Heat Maps for Fluent, Interactive Exploration of Omic Data
Levi Waldron: Cancer Genomics: Integrative and Scalable Solutions in R / Bioconductor
Rachel Karchin: Informatics Tools for High-Throughput Analysis of Cancer Mutations
Michael J Becich: Advanced Development of TIES-Enhancing Access to Tissue for Cancer Research
Imaging Session, Chair Joel Saltz
Xiaodong Wu Developing Enabling PET-CT Image Analysis Tools for Predicting Response in Radiation Cancer Therapy
Lauren Jean O’Donnell Open Source Diffusion MRI Technology for Brain Cancer Research
Christos Davatzikos Cancer Imaging Phenomics Software Suite: Application to Brain and Breast Cancer
John Quackenbush Quantitative Radiomics System Decoding the Tumor Phenotype
Lunch / Get together TOW Working Group
New Groups Lightning Talks
Vincent Carey: Accelerating Cancer Genomics with Cloud Scale Bioconductor
Nathalie Pochet: Integrative genomic framework for dissecting regulatory mechanisms underlying hepatocellular carcinoma
Raja Mazumder: Integration of comprehensive cancer mutation and expression-associated data for biomarker evaluation and discovery
Clinical Session 1, Chair Guergana Savova
Hua Xu and Ping Yang: Advancing Cancer Pharmacoepidemiology Research Through EHRs and Informatics
Guoqian Jiang: caCDE-QA: A Quality Assurance Platform for Cancer Study Common Data Elements
Hong Yu: EMR Adverse Drug Event Detection for Pharmacovigilance
Guergana Savova: Cancer Deep Phenotyping Extraction from Electronic Medical Records
Advanced Omics 1, Chair Brian Haas
Gabor Marth, Aaron Quinlan: Monitoring Tumor Heterogeneity Over Time and Space
Dinler Antunes: Structure-Based Selection of Tumor-Antigens for T-Cell Based Immunotherapy
Xinshu Grace Xiao: Informatics Tools for Single-Nucleotide Analysis of Cancer RNA-Seq
Brian Haas: Trinity: Transcriptome Assembly for Genetic and Functional Analysis of Cancer
Ben Raphael: Algorithms for Inferring Evolution and Migration of Tumors