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Monthly PI Teleconferences

December 7, 2018

Agenda and Notes

General Updates: Juli Klemm Slides

New ITCR R21: Statistical Evaluation and Selection of Normalization Methods for microRNA Sequencing Data in Cancer Biomarker Studies: Li-Xuan Qin Slides

Collaboration project overview: Integration of EMERSE and the OpenCDS platform: David Hanauer, Guilherme Del Fiol, Kensaku Kawamoto Slides

Collaboration project overview: Integration of the IGV into the cBioPortal analysis and visualization environment: JJ Gao Slides

 

November 2, 2018

Agenda and Notes

New ITCR R21: Inferring kinase activity profiles from phosphoproteomic data: Kristen Naegle Slides

New ITCR U24: A federated Galaxy for user-friendly, large-scale cancer genomics research: Jeremy Goecks, James Taylor Slides

Collaboration project overview: Enabling data distribution and sharing networks to address cancer health disparities: Brigitte Raumann Slides

 

October 5, 2018

Agenda and Notes

Overview of 2019 Annual Meeting Plans Hosted by University of Utah: Gabor Marth Slides

ITCR Explainer Videos and ITCR News: Mervi Heiskanen Slides

New R21 Award Overview: Predicting the Presence of Clinically Significant Prostate Cancer Using Multiparametric MRI and MR-US Fusion Biopsy: Corey Arnold Slides

New U01 Award Overview: Network Analysis for a Data-Driven Approach to Cancer Care:  Jeremy L. Warner Slides

 

September 7, 2018

Agenda and Notes

Overview of JCO Clinical Cancer Informatics: Jeremy Warner Slides

Collaborative project overview: Vincent Carey and Nathalie Pochet Slides

Collaborative project overview: Raja Mazumder and Evan Johnson Slides

 

August 3, 2018

Agenda and Notes

New ITCR R21 Grantee Presentation: An Ontology-driven Faceted Query Engine for the Kentucky Cancer Registry Slides

New ITCR R21 Grantee Presentation: Proteomic-based integrated subject-specific networks in cancer Slides

New ITCR Working Group Proposal: Sustainability and Industry Partnership WG Slides

 

June 1, 2018

Agenda and Notes

Introduction: Game Technologies for Data Analysis and User Engagement – Dave Miller, NCI Slides

Graphspace and Flud -TM Murali, Virginia Tech Slides

Science Game Lab – Nick Fortugno, Playmatics

 

May 4, 2018

Agenda and Notes

General Announcements and ITCR 2018 Annual Meeting Slides

SEER Overview, Paul Fearn Slides

CISNET Overview, Rocky Feuer Slides

 

April 6, 2018

Agenda and Notes

General Announcements and ITCR 2018 Annual Meeting Slides

Overview of Human Tumor Atlas Network, Shannon Hughes Slides

 

March 2, 2018

Agenda and Notes

ITCR Program Evaluation and Annual Meeting Updates, Juli Klemm & Mervi Heiskanen Slides

Overview of CANDLE - Cancer Distributed Learning Environment, Eric Stahlberg Slides

 

February 2, 2018

Agenda and Notes

Overview of the Physical Sciences in Oncology Network, Nastaran Zahir Slides

Overview of the Cancer Systems Biology Consortium, Shannon Hughes Slides

 

January 5, 2018

Agenda and Notes

“Crowds Cure Cancer” Collaboration, Jayashree Kalpathy-Cramer Slides

Admin Supplement Overview: Establishing Prognostic Quantitative Imaging Features of LGGs Slides, Lee Cooper Slides

 

December 1, 2017

Agenda and Notes

Developing the JBrowse Genome Browser to Visualize Structural Variants and Cancer Genomics Data (U24) Lincoln Stein, Ian Holmes Slides

Integrating TIES and Xena to Support Semantic Clinical Queries in Complex Genomic Situations (Admin Supplement) Michael Becich, David Haussler Slides

Integrative Analysis of Cancer Single-cell Transcriptomic and Functional Proteomic Data Han Liang (ITCR) Lidong Qin (IMAT) (IMAT-ITCR Collaboration) Slides

A Bioconductor Software Package for LISH-seq Probe Design and Data Analysis Kasper Hansen/Martin Morgan (ITCR), Ben Larman (IMAT) (IMAT-ITCR Collaboration) Slides

 

November 3, 2017

Agenda and Notes

Announcements

Building protected data sharing networks to advance cancer risk assessment and treatment (U24) Ian Foster Slides

Advanced development and dissemination of EMERSE for cancer phenotyping from medical records (U24) David Hanauer Slides

TCIA sustainment and scalability - Platforms for quantitative imaging informatics in precision medicine (U24) Fred Prior, Joel Saltz, Ashish Sharma Slides

Integrative analysis of the IvyGAP data Christos Davatzikos, Joel Saltz, Jayashree Kalpathy-Cramer, John Weinstein/Bradley Broom Slides

Facilitating curation of BRCA variants with 3D structure context Rachel Karchin Slides

 

October 6, 2017

Agenda and Notes

General Updates Slides

A network-based approach for personalized treatment of Multiple Myeloma (R21) Slides

An interactive analysis toolkit for single cell RNA-seq in cancer research (U01) Slides

The cBioPortal for Cancer Genomics (U24) Slides

Scalable Clinical Decision Support for Individualized Cancer Risk Management (U24) Slides

 

July 7, 2017

Agenda and Notes

Overview of collaborative set-aside project – Gabor Marth, Aaron Quinlan Slides

Overviews of ITCR-IMAT collaborative supplement projects – Tim Griffin Slides, Obi Griffith Slides

 

May 5, 2017

Agenda and Notes

Ivy Glioblastoma Atlas Project (GAP) Data - Juli Klemm Slides

 

April 7, 2017

Agenda and Notes

Overviews of Collaborative Set-Aside Projects - Helga Thorvaldsdóttir Slides and Han Liang Slides

 

March 3, 2017

Agenda and Notes

TCIA Glioma Image Segmentations: Christos Davatzikos Slides

The ISB Cancer Genomics Cloud: Sheila Reynolds Slides 

 

February 3, 2017

Agenda and Notes

Creating MOOCs for Bioinformatics: Phillip Compeau Slides 

 

January 6, 2017

Agenda and Notes

Extending 3D Slicer to support pathology tissue segmentation data

 

December 2, 2016

Agenda and Notes

Cravat and NDEx

DeepPhe and caCDE-QA

 

November 4, 2016

Agenda and Notes

Slides - Angela Mariotto

Slides - Robert Nordstrom

 

October 7, 2016

Agenda and Notes

 

September 2, 2016

Agenda and Notes

Slides-Tom Doak

 

August 5, 2016

Agenda and Notes

 

May 6, 2016

Agenda and Notes

Slides-Dan Crichton NASA JPL

 

April 1, 2016

Agenda and Notes

Administrative Supplements

Annual Meeting Agenda (Draft)

Slides-IDAA WG

Slides-Containers WG

 

March 4, 2016

Agenda and Notes

Slides

 

February 5, 2016

Agenda and Notes

Slides

 

December 4, 2015

Agenda and Notes

Slides

Excel paper (Weinstein)

 

November 6, 2015

Agenda and Notes

Presentations

 

October 2, 2015

Agenda and Notes

Presentations

 

September 4, 2015

 Notes 

Presentations

Created by Mervi Heiskanen Last Modified Fri December 7, 2018 10:02 am by Mervi Heiskanen