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Monthly PI Teleconferences

December 7, 2018

Agenda and Notes

General Updates: Juli Klemm Slides

New ITCR R21: Statistical Evaluation and Selection of Normalization Methods for microRNA Sequencing Data in Cancer Biomarker Studies: Li-Xuan Qin Slides

Collaboration project overview: Integration of EMERSE and the OpenCDS platform: David Hanauer, Guilherme Del Fiol, Kensaku Kawamoto Slides

Collaboration project overview: Integration of the IGV into the cBioPortal analysis and visualization environment: JJ Gao Slides


November 2, 2018

Agenda and Notes

New ITCR R21: Inferring kinase activity profiles from phosphoproteomic data: Kristen Naegle Slides

New ITCR U24: A federated Galaxy for user-friendly, large-scale cancer genomics research: Jeremy Goecks, James Taylor Slides

Collaboration project overview: Enabling data distribution and sharing networks to address cancer health disparities: Brigitte Raumann Slides


October 5, 2018

Agenda and Notes

Overview of 2019 Annual Meeting Plans Hosted by University of Utah: Gabor Marth Slides

ITCR Explainer Videos and ITCR News: Mervi Heiskanen Slides

New R21 Award Overview: Predicting the Presence of Clinically Significant Prostate Cancer Using Multiparametric MRI and MR-US Fusion Biopsy: Corey Arnold Slides

New U01 Award Overview: Network Analysis for a Data-Driven Approach to Cancer Care:  Jeremy L. Warner Slides


September 7, 2018

Agenda and Notes

Overview of JCO Clinical Cancer Informatics: Jeremy Warner Slides

Collaborative project overview: Vincent Carey and Nathalie Pochet Slides

Collaborative project overview: Raja Mazumder and Evan Johnson Slides


August 3, 2018

Agenda and Notes

New ITCR R21 Grantee Presentation: An Ontology-driven Faceted Query Engine for the Kentucky Cancer Registry Slides

New ITCR R21 Grantee Presentation: Proteomic-based integrated subject-specific networks in cancer Slides

New ITCR Working Group Proposal: Sustainability and Industry Partnership WG Slides


June 1, 2018

Agenda and Notes

Introduction: Game Technologies for Data Analysis and User Engagement – Dave Miller, NCI Slides

Graphspace and Flud -TM Murali, Virginia Tech Slides

Science Game Lab – Nick Fortugno, Playmatics


May 4, 2018

Agenda and Notes

General Announcements and ITCR 2018 Annual Meeting Slides

SEER Overview, Paul Fearn Slides

CISNET Overview, Rocky Feuer Slides


April 6, 2018

Agenda and Notes

General Announcements and ITCR 2018 Annual Meeting Slides

Overview of Human Tumor Atlas Network, Shannon Hughes Slides


March 2, 2018

Agenda and Notes

ITCR Program Evaluation and Annual Meeting Updates, Juli Klemm & Mervi Heiskanen Slides

Overview of CANDLE - Cancer Distributed Learning Environment, Eric Stahlberg Slides


February 2, 2018

Agenda and Notes

Overview of the Physical Sciences in Oncology Network, Nastaran Zahir Slides

Overview of the Cancer Systems Biology Consortium, Shannon Hughes Slides


January 5, 2018

Agenda and Notes

“Crowds Cure Cancer” Collaboration, Jayashree Kalpathy-Cramer Slides

Admin Supplement Overview: Establishing Prognostic Quantitative Imaging Features of LGGs Slides, Lee Cooper Slides


December 1, 2017

Agenda and Notes

Developing the JBrowse Genome Browser to Visualize Structural Variants and Cancer Genomics Data (U24) Lincoln Stein, Ian Holmes Slides

Integrating TIES and Xena to Support Semantic Clinical Queries in Complex Genomic Situations (Admin Supplement) Michael Becich, David Haussler Slides

Integrative Analysis of Cancer Single-cell Transcriptomic and Functional Proteomic Data Han Liang (ITCR) Lidong Qin (IMAT) (IMAT-ITCR Collaboration) Slides

A Bioconductor Software Package for LISH-seq Probe Design and Data Analysis Kasper Hansen/Martin Morgan (ITCR), Ben Larman (IMAT) (IMAT-ITCR Collaboration) Slides


November 3, 2017

Agenda and Notes


Building protected data sharing networks to advance cancer risk assessment and treatment (U24) Ian Foster Slides

Advanced development and dissemination of EMERSE for cancer phenotyping from medical records (U24) David Hanauer Slides

TCIA sustainment and scalability - Platforms for quantitative imaging informatics in precision medicine (U24) Fred Prior, Joel Saltz, Ashish Sharma Slides

Integrative analysis of the IvyGAP data Christos Davatzikos, Joel Saltz, Jayashree Kalpathy-Cramer, John Weinstein/Bradley Broom Slides

Facilitating curation of BRCA variants with 3D structure context Rachel Karchin Slides


October 6, 2017

Agenda and Notes

General Updates Slides

A network-based approach for personalized treatment of Multiple Myeloma (R21) Slides

An interactive analysis toolkit for single cell RNA-seq in cancer research (U01) Slides

The cBioPortal for Cancer Genomics (U24) Slides

Scalable Clinical Decision Support for Individualized Cancer Risk Management (U24) Slides


July 7, 2017

Agenda and Notes

Overview of collaborative set-aside project – Gabor Marth, Aaron Quinlan Slides

Overviews of ITCR-IMAT collaborative supplement projects – Tim Griffin Slides, Obi Griffith Slides


May 5, 2017

Agenda and Notes

Ivy Glioblastoma Atlas Project (GAP) Data - Juli Klemm Slides


April 7, 2017

Agenda and Notes

Overviews of Collaborative Set-Aside Projects - Helga Thorvaldsdóttir Slides and Han Liang Slides


March 3, 2017

Agenda and Notes

TCIA Glioma Image Segmentations: Christos Davatzikos Slides

The ISB Cancer Genomics Cloud: Sheila Reynolds Slides 


February 3, 2017

Agenda and Notes

Creating MOOCs for Bioinformatics: Phillip Compeau Slides 


January 6, 2017

Agenda and Notes

Extending 3D Slicer to support pathology tissue segmentation data


December 2, 2016

Agenda and Notes

Cravat and NDEx

DeepPhe and caCDE-QA


November 4, 2016

Agenda and Notes

Slides - Angela Mariotto

Slides - Robert Nordstrom


October 7, 2016

Agenda and Notes


September 2, 2016

Agenda and Notes

Slides-Tom Doak


August 5, 2016

Agenda and Notes


May 6, 2016

Agenda and Notes

Slides-Dan Crichton NASA JPL


April 1, 2016

Agenda and Notes

Administrative Supplements

Annual Meeting Agenda (Draft)

Slides-IDAA WG

Slides-Containers WG


March 4, 2016

Agenda and Notes



February 5, 2016

Agenda and Notes



December 4, 2015

Agenda and Notes


Excel paper (Weinstein)


November 6, 2015

Agenda and Notes



October 2, 2015

Agenda and Notes



September 4, 2015



Created by Mervi Heiskanen Last Modified Fri December 7, 2018 10:02 am by Mervi Heiskanen