Day One
Welcome: Josh Stuart
Resources Session I, Chair Obi Griffith
Obi Griffith: Development of Informatics Resources for Interpretation of Clinically Actionable Variants in Cancer
Terry Meehan: The PDX Integrator – Re-Purposing KOMP2 Informatics to Widely Disseminate Data from Patient Derived Xenografts and Electronic Access to Mouse Tumor Data
John Weinstein and Bradley Broom: Next-Generation Clustered Heat Maps for Fluent, Interactive Exploration of Omic Data
Levi Waldron: Cancer Genomics: Integrative and Scalable Solutions in R / Bioconductor
Rachel Karchin: Informatics Tools for High-Throughput Analysis of Cancer Mutations
Michael J Becich: Advanced Development of TIES-Enhancing Access to Tissue for Cancer Research
Imaging Session I, Chair Joel Saltz
Xiaodong Wu Developing Enabling PET-CT Image Analysis Tools for Predicting Response in Radiation Cancer Therapy
Lauren Jean O’Donnell Open Source Diffusion MRI Technology for Brain Cancer Research
Christos Davatzikos Cancer Imaging Phenomics Software Suite: Application to Brain and Breast Cancer
John Quackenbush Quantitative Radiomics System Decoding the Tumor Phenotype
Lunch / Get together TOW Working Group
New Groups Lightning Talks
Vincent Carey: Accelerating Cancer Genomics with Cloud Scale Bioconductor
Nathalie Pochet: Integrative genomic framework for dissecting regulatory mechanisms underlying hepatocellular carcinoma
Raja Mazumder: Integration of comprehensive cancer mutation and expression-associated data for biomarker evaluation and discovery
Clinical Session I, Chair Guergana Savova
Hua Xu and Ping Yang: Advancing Cancer Pharmacoepidemiology Research Through EHRs and Informatics
Guoqian Jiang: caCDE-QA: A Quality Assurance Platform for Cancer Study Common Data Elements
Hong Yu: EMR Adverse Drug Event Detection for Pharmacovigilance
Guergana Savova: Cancer Deep Phenotyping Extraction from Electronic Medical Records
Advanced Omics Session I, Chair Brian Haas
Gabor Marth, Aaron Quinlan: Monitoring Tumor Heterogeneity Over Time and Space
Dinler Antunes: Structure-Based Selection of Tumor-Antigens for T-Cell Based Immunotherapy
Xinshu Grace Xiao: Informatics Tools for Single-Nucleotide Analysis of Cancer RNA-Seq
Brian Haas: Trinity: Transcriptome Assembly for Genetic and Functional Analysis of Cancer
Ben Raphael (Keynote): Algorithms for Inferring Evolution and Migration of Tumors
Day Two
Imaging Session II, Chair Andrey Fedorov
Andrey Fedorov: Quantitative Image Informatics for Cancer Research (QIICR)
John Flavin and Steve More: Integrative Imaging Informatics for Cancer Research
Avant Madabhushi and Anne Martel: Pathology Image Informatics Platform for Visualization, Analysis and Management
Kun Huang: Informatics Links between Histological Features and Genetics in Cancer
Jayashree Kalpathy-Cramer: Informatics Tools for Optimized Imaging Biomarkers for Cancer Research & Discovery
Joel Saltz: Tools to Analyze Morphology and Spatially Mapped Molecular Data
Resources Session II, Chair Jing Zhu
Jill Mesirov: The Integrative Genomics Viewer (IGV): Visualization Supporting Cancer Research
Timothy Griffin: A Galaxy-Based Multi-Omic Informatics Hub for Cancer Researchers
Josh Stuart and Kyle Ellrott: BMEG: Biomedical Evidence Graph
Trey Ideker and Dexter Pratt: NDEx – the Network Data Exchange, A Network Commons for Biologists
Jiang Zhu: UCSC Xena – Cloud Based Resource for Data Hosting, Visualization and Analysis
Advanced Omits Session II, Chair Alexander Krasnitz
Han Liang: The Cancer Proteome Atlas, TCPA: An Integrated Bioinformatics Resource for Functional Cancer Proteomic Data
Dongjun Chung: Algorithms for Literature-Guided Multi-Platform Identification of Cancer Subtypes
Alexander Krasnitz: Computational Framework for Single-Cell Genomics of Tumors
Jingshan Huang: Omni Search: A Semantic Search Tool for Discovering Micro RNAs’ Critical Roles in Human Cancer
Imaging Session III, Chair Hiroyuki Yoshida
Srinivas Chakra Chennubhotla and Daryl Sarachan: nformatics Tools for Tumor Heterogeneity in Multiplexed Fluorescence Images
Trinity Urban: Next Steps for Lesion Tracker: Integration with a Clinical Trials Workflow Informatics System
David Andrew Gutman: Advanced Development of an Open-source Platform for Web-based Integrative Digital Image Analysis in Cancer
Group Discussion