ITCR 2016 Annual Meeting Presentations:
Notes taken during the meeting are available here
Day One
Welcome: Juli Klemm and Aviv Regev
Keynote Corrie Painter: Empowering Patients to Drive Biomedical Research
Genomics Session I Chair: Joshua Stuart
Martin Morgan: Cancer Genomics: Integrative and Scalable Solutions in R / Bioconductor
Jingchun Zhu: Cloud Based Resource for Data Hosting, Visualization and Analysis Using UCSC Xena
Jill Mesirov: Gene Pattern Notebooks for Cancer Research
Trey Ideker: NDEx – the Network Data Exchange, a Network Commons for Biologists
Imaging Session I Chair: Rebecca Jacobson
David Gutman: Advanced Development of an Open Source Platform for Web-Based Integrative Digital Image Analysis in Cancer
Jayashree Kalpathy-Cramer Informatics: Tools for Optimized Imaging Biomarkers for Cancer Research & Discovery
Andriy Fedorov: Quantitative Image Informatics for Cancer Research (QIICR)
Christos Davatzikos and Lee Cooper: Cancer Imaging Phenomics Software Suite: Application to Brain and Breast Cancer
ITCR Training and Outreach Working Group Lunch Meeting
Lightning Talks for New Groups
Xiao Xinshu: Informatic Tools for Single-Nucleotide Analysis of Cancer RNA-Seq Chakra Chennubhotla: Srinivas Informatics Tools for Tumor Heterogeneity in Multiplexed Fluorescence Images
Terry Meehan: The PDX Integrator- Re-purposing KOMP2 informatics to Widely Disseminate Data from Patient Derived Xenografts
Daniel Marcus: Integrative Imaging Informatics for Cancer Research
Hua Xu: Advancing Cancer Pharmacoepidemiology Research Through EHRs and Informatics
Timothy Griffin: A Galaxy‐Based Multi‐Omic Informatics Hub for Cancer Researchers
Genomics Session II Chair: Jill Mesirov
Brian Haas Trinity: Transcriptome Assembly for Genetic and Functional Analysis of Cancer
Alexander Krasnitz: Computational Framework for Single – Cell Genomics of Tumors
Xiaole Shirley Liu: Developing Informatics Technologies to Model Cancer Gene Regulation
Technical Working Group Demonstration Projects Led by Jayashree Kalpathy-Cramer and Tahsin Kurc
Clinical Session I Chair: Aviv Regev
Guoqian Jiang: caCDE-QA: A Quality Assurance Platform for Cancer Study Common Data Elements
Rebecca Jacobson: Advanced Development of TIES-¬‐Enhancing Access to Tissue for Cancer Research
Elmer Bernstam: Informatics to enable routine personalized cancer therapy
Keynote Eli Van Allen: Clinical interpretation of the cancer genome for precision oncology
Poster Session
Day Two
Opportunities for IMAT – ITCR Collaboration Tony Dickherber and David Hill
Genomics Session III Chair: Trey Ideker
Rachel Karchin and Mike Ryan: Informatics Tools for High-¬throughput Analysis of Cancer Mutations
Bobbie-Jo Webb-Robertson: Interactive Informatics Resource for Research-¬‐ Driven Cancer Proteomics
Yaoyu Wang: Me V: Software for Next Generation Genomic Data Analysis
Jingshan Huang: Omni Search – A Semantic Search Tool for Discovering microRNAs Critical Roles in Human Cancer
Imaging Session II Chair: Xiaole Shirley Liu
Gordon Harris: Extensible Open-‐Source Zero-¬‐Footprint Web Viewer for Oncologic Imaging Research
Joel Saltz: Tools to Analyze Morphology and Spatially Mapped Molecular Data
Kun Huang: Informatics Links Between Histological Features and Genetics in Cancer
Anant Madabhushi: Pathology Image Informatics Platform for Visualization, Analysis and Management
“ITCR Technical Working Group Lunch Meeting”
Genomics Session IV Chair: Brian Haas
Benjamin Berman: Software Tools for Regulatory Analysis of Large Cancer Methylome Datasets
Maureen Sartor: Integrative Epigenomic / Genomic Profiling and Biomarker Discovery in HPV+ and HPV-
John Weinstein and Bradley Broom: Next ‐ Generation Clustered Heat Maps for Fluent, Interactive Exploration of Omic Data
Big Data and EMR Session Chair: Rachel Karchin
Joshua Stuart: ESCE: Discovering Molecular Processes
Hong Yu: EMR Adverse Drug Event Detection for Pharmacovigilance
Guergana Savova: Cancer Deep Phenotype Extraction from Electronic Medical Records
Imaging Session III Chair: Robert Majovski
Hugo Aerts: Quantitative Radiomics System Decoding the Tumor Phenotype
Lauren O’Donnell: Open Source Diffusion MRI Technology for Brain Cancer Research
Discussion of Collaboration and Integration Opportunities: Led by Joel Saltz and Jill Mesirov
Closing Remarks: Juli Klemm and Aviv Regev