== '''Day One''' == '''Welcome:''' Josh Stuart '''Resources Session I''', Chair Obi Griffith [https://nciphub.org/collections/post/1304/download/01_Griffith_CIViC_ITCR_Meeting2017.pdf Obi Griffith]: Development of Informatics Resources for Interpretation of Clinically Actionable Variants in Cancer [https://nciphub.org/collections/post/1304/download/02_Meehan_PDX_finder_ITCR_Meehan.pdf Terry Meehan]: The PDX Integrator - Re-Purposing KOMP2 Informatics to Widely Disseminate Data from Patient Derived Xenografts and Electronic Access to Mouse Tumor Data [https://nciphub.org/collections/post/1304/download/03_Broom-Weinstein-ITCR-PI-2017-presentation.pdf John Weinstein and Bradley Broom]: Next-Generation Clustered Heat Maps for Fluent, Interactive Exploration of Omic Data [https://nciphub.org/collections/post/1304/download/04_Waldron_MultiAssayExperiment.pdf Levi Waldron]: Cancer Genomics: Integrative and Scalable Solutions in R / Bioconductor [https://nciphub.org/collections/post/1304/download/05_Karchin_cravat-u24-presentation.pdf Rachel Karchin]: Informatics Tools for High-Throughput Analysis of Cancer Mutations [https://nciphub.org/collections/post/1304/download/06_Becich_ICTR_Meeting_May_31_2017_Becich_PPT_TIES_TCRN_MBv1_20170530.pdf Michael J Becich]: Advanced Development of TIES-Enhancing Access to Tissue for Cancer Research '''Imaging Session I''', Chair Joel Saltz [https://nciphub.org/collections/post/1304/download/07_Wu_UIowa-XWu.pdf Xiaodong Wu] Developing Enabling PET-CT Image Analysis Tools for Predicting Response in Radiation Cancer Therapy [https://nciphub.org/collections/post/1304/download/08_ODonnell_2017_ITCR_U01_ODonnell.pdf Lauren Jean O'Donnell] Open Source Diffusion MRI Technology for Brain Cancer Research [https://nciphub.org/collections/post/1304/download/09_Davatzikos_ITCR_2017_mov.pdf Christos Davatzikos] Cancer Imaging Phenomics Software Suite: Application to Brain and Breast Cancer [https://nciphub.org/collections/post/1304/download/10_Quackenbush_20170531.ITCR.RadiomicsIO.JohnQ.pdf John Quackenbush] Quantitative Radiomics System Decoding the Tumor Phenotype Lunch / Get together TOW Working Group '''New Groups Lightning Talks''' [https://nciphub.org/collections/post/1304/download/11_Carey_May31CareyOneSl.pdf Vincent Carey]: Accelerating Cancer Genomics with Cloud Scale Bioconductor [https://nciphub.org/collections/post/1304/download/12_Pochet_NIH_NCI_ITCR_SantaCruz2017_FlashTalk_final.pdf Nathalie Pochet]: Integrative genomic framework for dissecting regulatory mechanisms underlying hepatocellular carcinoma [https://nciphub.org/collections/post/1304/download/13_Mazumder_U01Slide_Mazumder.pdf Raja Mazumder]: Integration of comprehensive cancer mutation and expression-associated data for biomarker evaluation and discovery '''Clinical Session I''', Chair Guergana Savova [https://nciphub.org/collections/post/1304/download/14_Xu_2017_ITCR_Hua_Xu_slides.pdf Hua Xu and Ping Yang]: Advancing Cancer Pharmacoepidemiology Research Through EHRs and Informatics [https://nciphub.org/collections/post/1304/download/15_Jiang_nci-itcr-2017-caCDE-QA-presentation-GJiang-0530.pdf Guoqian Jiang]: caCDE-QA: A Quality Assurance Platform for Cancer Study Common Data Elements [https://nciphub.org/collections/post/1304/download/16_Yu_ITCR_Hong.Yu.2017.pdf Hong Yu]: EMR Adverse Drug Event Detection for Pharmacovigilance [https://nciphub.org/collections/post/1304/download/17_Savova_2017_June_PI_meeting.pdf Guergana Savova]: Cancer Deep Phenotyping Extraction from Electronic Medical Records '''Advanced Omits Session I''', Chair Brian Haas [https://nciphub.org/collections/post/1304/download/18_Marth_2017-05-31_ITCR_Marth_v05.pdf Gabor Marth], Aaron Quinlan: Monitoring Tumor Heterogeneity Over Time and Space [https://nciphub.org/collections/post/1304/download/19_Antunes_ITCRmeeting_2017.pdf Dinler Antunes]: Structure-Based Selection of Tumor-Antigens for T-Cell Based Immunotherapy [https://nciphub.org/collections/post/1304/download/20_Xiao.SNV.pdf Xinshu Grace Xiao]: Informatics Tools for Single-Nucleotide Analysis of Cancer RNA-Seq [https://nciphub.org/collections/post/1304/download/21_Haas_ITCR_Trinity_May312017_SantaCruz.pdf Brian Haas]: Trinity: Transcriptome Assembly for Genetic and Functional Analysis of Cancer Ben Raphael (Keynote): Algorithms for Inferring Evolution and Migration of Tumors == '''Day Two''' == '''Imaging Session II''', Chair Andrey Fedorov Andrey Fedorov: Quantitative Image Informatics for Cancer Research (QIICR) John Flavin and Steve More: Integrative Imaging Informatics for Cancer Research Avant Madabhushi and Anne Martel: Pathology Image Informatics Platform for Visualization, Analysis and Management Kun Huang: Informatics Links between Histological Features and Genetics in Cancer Jayashree Kalpathy-Cramer: Informatics Tools for Optimized Imaging Biomarkers for Cancer Research & Discovery Joel Saltz: Tools to Analyze Morphology and Spatially Mapped Molecular Data '''Resources Session II''', Chair Jing Zhu Jill Mesirov: The Integrative Genomics Viewer (IGV): Visualization Supporting Cancer Research Timothy Griffin: A Galaxy-Based Multi-Omic Informatics Hub for Cancer Researchers Josh Stuart and Kyle Ellrott: BMEG: Biomedical Evidence Graph Trey Ideker and Dexter Pratt: NDEx - the Network Data Exchange, A Network Commons for Biologists Jiang Zhu: UCSC Xena - Cloud Based Resource for Data Hosting, Visualization and Analysis '''Advanced Omits Session II''', Chair Alexander Krasnitz Han Liang: The Cancer Proteome Atlas, TCPA: An Integrated Bioinformatics Resource for Functional Cancer Proteomic Data Donjon Chung: Algorithms for Literature-Guided Multi-Platform Identification of Cancer Subtypes Alexander Krasnitz: Computational Framework for Single-Cell Genomics of Tumors Jingshan Huang: Omni Search: A Semantic Search Tool for Discovering Micro RNAs' Critical Roles in Human Cancer '''Imaging Session III''', Chair Hiroyuki Yoshida Srinivas Chakra Chennubhotla and Daryl Sarachan: nformatics Tools for Tumor Heterogeneity in Multiplexed Fluorescence Images Trinity Urban: Next Steps for Lesion Tracker: Integration with a Clinical Trials Workflow Informatics System David Andrew Gurman: Advanced Development of an Open-source Platform for Web-based Integrative Digital Image Analysis in Cancer Group Discussion