== '''Day One''' ==


'''Welcome:''' Josh Stuart

'''Resources I'''____, Chair Obi Griffith 

Obi Griffith: Development of Informatics Resources for Interpretation of Clinically Actionable Variants in Cancer

Terry Meehan:  The PDX Integrator - Re-Purposing KOMP2 Informatics to Widely Disseminate Data from Patient Derived Xenografts and Electronic Access to Mouse Tumor Data

John Weinstein and Bradley Broom: Next-Generation Clustered Heat Maps for Fluent, Interactive Exploration of Omic Data

Levi Waldron: Cancer Genomics: Integrative and Scalable Solutions in R / Bioconductor

Rachel Karchin: Informatics Tools for High-Throughput Analysis of Cancer Mutations

Michael J Becich: Advanced Development of TIES-Enhancing Access to Tissue for Cancer Research


__'''Imaging Session I'''__, Chair Joel Saltz

Xiaodong Wu Developing Enabling PET-CT Image Analysis Tools for Predicting Response in Radiation Cancer Therapy

Lauren Jean O'Donnell Open Source Diffusion MRI Technology for Brain Cancer Research

Christos Davatzikos Cancer Imaging Phenomics Software Suite: Application to Brain and Breast Cancer

John Quackenbush Quantitative Radiomics System Decoding the Tumor Phenotype


Lunch / Get together TOW Working Group


'''New Groups Lightning Talks'''____

Vincent Carey: Accelerating Cancer Genomics with Cloud Scale Bioconductor

Nathalie Pochet: Integrative genomic framework for dissecting regulatory mechanisms underlying hepatocellular carcinoma

Raja Mazumder: Integration of comprehensive cancer mutation and expression-associated data for biomarker evaluation and discovery


'''Clinical Session I'''____, Chair Guergana Savova

Hua Xu and Ping Yang: Advancing Cancer Pharmacoepidemiology Research Through EHRs and Informatics

Guoqian Jiang: caCDE-QA: A Quality Assurance Platform for Cancer Study Common Data Elements

Hong Yu: EMR Adverse Drug Event Detection for Pharmacovigilance

Guergana Savova: Cancer Deep Phenotyping Extraction from Electronic Medical Records


'''Advanced Omics I'''____, Chair Brian Haas

Gabor Marth, Aaron Quinlan: Monitoring Tumor Heterogeneity Over Time and Space

Dinler Antunes: Structure-Based Selection of Tumor-Antigens for T-Cell Based Immunotherapy

Xinshu Grace Xiao: Informatics Tools for Single-Nucleotide Analysis of Cancer RNA-Seq

Brian Haas: Trinity: Transcriptome Assembly for Genetic and Functional Analysis of Cancer

Ben Raphael: Algorithms for Inferring Evolution and Migration of Tumors



== '''Day Two''' ==


'''Imaging II'''____, Chair Andrey Fedorov

Andrey Fedorov: Quantitative Image Informatics for Cancer Research (QIICR)

John Flavin and Steve More: Integrative Imaging Informatics for Cancer Research

Avant Madabhushi and  Anne Martel: Pathology Image Informatics Platform for Visualization, Analysis and Management

Kun Huang: Informatics Links between Histological Features and Genetics in Cancer

Jayashree Kalpathy-Cramer: Informatics Tools for Optimized Imaging Biomarkers for Cancer Research & Discovery

Joel Saltz: Tools to Analyze Morphology and Spatially Mapped Molecular Data


'''Resources II'''____, Chair Jing Zhu

Jill Mesirov: The Integrative Genomics Viewer (IGV): Visualization Supporting Cancer Research

Timothy Griffin: A Galaxy-Based Multi-Omic Informatics Hub for Cancer Researchers

Josh Stuart and Kyle Ellrott: BMEG: Biomedical Evidence Graph

Trey Ideker and Dexter Pratt: NDEx - the Network Data Exchange, A Network Commons for Biologists

Jiang Zhu: UCSC Xena - Cloud Based Resource for Data Hosting, Visualization and Analysis


'''Advanced Omics II'''____, Chair Alexander Krasnitz

Han Liang: The Cancer Proteome Atlas, TCPA: An Integrated Bioinformatics Resource for Functional Cancer Proteomic Data

Donjon Chung: Algorithms for Literature-Guided Multi-Platform Identification of Cancer Subtypes

Alexander Krasnitz: Computational Framework for Single-Cell Genomics of Tumors

Jingshan Huang: OmniSearch: A Semantic Search Tool for Discovering MicroRNAs' Critical Roles in Human Cancer


'''Imaging III'''____, Chair Hiroyuki Yoshida

Srinivas Chakra Chennubhotla and Daryl Sarachan: nformatics Tools for Tumor Heterogeneity in Multiplexed Fluorescence Images

Trinity Urban: Next Steps for LesionTracker: Integration with a Clinical Trials Workflow Informatics System

David Andrew Gurman: Advanced Development of an Open-source Platform for Web-based Integrative Digital Image Analysis in Cancer

Group Discussion